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Sample GSM651476 Query DataSets for GSM651476
Status Public on Mar 15, 2011
Title BXA8/PgnJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXA8/PgnJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXA8/PgnJ_hippo_pval

Data table
ID_REF VALUE BXA8/PgnJ_hippo_pval
ILMN_1248788 158.486 0.1491228
ILMN_2707227 176.298 0.04887218
ILMN_2896528 4769.094 0
ILMN_2721178 1221.823 0
ILMN_1227723 488.1148 0
ILMN_3033922 2252.386 0
ILMN_3092673 6784.156 0
ILMN_2730714 4197.872 0
ILMN_3162224 1999.805 0
ILMN_2816356 187.6972 0.01754386
ILMN_2808939 1522.887 0
ILMN_2634564 650.0589 0
ILMN_1216623 671.2725 0
ILMN_1215157 967.8832 0
ILMN_1228777 141.594 0.518797
ILMN_2737647 140.9516 0.5413534
ILMN_1216425 133.6762 0.820802
ILMN_2734484 519.7258 0
ILMN_2652961 129.5772 0.9185464
ILMN_2952292 195.8369 0.01002506

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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