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Sample GSM651477 Query DataSets for GSM651477
Status Public on Mar 15, 2011
Title BXD1/TyJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXD1/TyJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXD1/TyJ_hippo_pval

Data table
ID_REF VALUE BXD1/TyJ_hippo_pval
ILMN_1248788 137.7945 0.462406
ILMN_2707227 165.7882 0.0651629
ILMN_2896528 4922.093 0
ILMN_2721178 1395.865 0
ILMN_1227723 487.254 0
ILMN_3033922 2236.754 0
ILMN_3092673 6824.833 0
ILMN_2730714 4069.736 0
ILMN_3162224 1982.926 0
ILMN_2816356 175.6093 0.03132832
ILMN_2808939 1303.482 0
ILMN_2634564 743.3638 0
ILMN_1216623 943.1193 0
ILMN_1215157 1205.62 0
ILMN_1228777 149.0744 0.2218045
ILMN_2737647 169.085 0.04761905
ILMN_1216425 126.7378 0.8057644
ILMN_2734484 845.5534 0
ILMN_2652961 124.5438 0.858396
ILMN_2952292 230.6641 0.003759399

Total number of rows: 25697

Table truncated, full table size 731 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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