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Sample GSM651504 Query DataSets for GSM651504
Status Public on Mar 15, 2011
Title BXD6/TyJ_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXD6/TyJ
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXD6/TyJ_hippo_pval

Data table
ID_REF VALUE BXD6/TyJ_hippo_pval
ILMN_1248788 153.8415 0.1892231
ILMN_2707227 180.2202 0.03132832
ILMN_2896528 5589.604 0
ILMN_2721178 1473.981 0
ILMN_1227723 485.5235 0
ILMN_3033922 2565.76 0
ILMN_3092673 7469.233 0
ILMN_2730714 4712.838 0
ILMN_3162224 2403.364 0
ILMN_2816356 192.7537 0.01503759
ILMN_2808939 1647.117 0
ILMN_2634564 718.1849 0
ILMN_1216623 944.443 0
ILMN_1215157 1249.222 0
ILMN_1228777 137.0934 0.4899749
ILMN_2737647 158.9391 0.1378446
ILMN_1216425 146.5823 0.2919799
ILMN_2734484 762.2337 0
ILMN_2652961 127.4755 0.7706767
ILMN_2952292 213.6336 0.005012531

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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