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Sample GSM651509 Query DataSets for GSM651509
Status Public on Mar 15, 2011
Title BXH19_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: BXH19
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXH19_hippo_pval

Data table
ID_REF VALUE BXH19_hippo_pval
ILMN_1248788 161.7189 0.1654135
ILMN_2707227 169.5794 0.0726817
ILMN_2896528 4937.61 0
ILMN_2721178 1047.519 0
ILMN_1227723 452.6591 0
ILMN_3033922 1784.181 0
ILMN_3092673 6621.906 0
ILMN_2730714 3761.146 0
ILMN_3162224 2236.192 0
ILMN_2816356 200.3635 0.006265664
ILMN_2808939 1506.922 0
ILMN_2634564 525.4781 0
ILMN_1216623 674.2215 0
ILMN_1215157 906.7839 0
ILMN_1228777 177.3943 0.03634085
ILMN_2737647 168.9194 0.0764411
ILMN_1216425 148.6554 0.5250627
ILMN_2734484 822.665 0
ILMN_2652961 161.4664 0.1679198
ILMN_2952292 246.8171 0

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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