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Sample GSM651519 Query DataSets for GSM651519
Status Public on Mar 15, 2011
Title C3H_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: C3H
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
C3H_hippo_pval

Data table
ID_REF VALUE C3H_hippo_pval
ILMN_1248788 202.8075 0.01629073
ILMN_2707227 204.3853 0.01629073
ILMN_2896528 3850.759 0
ILMN_2721178 1121.391 0
ILMN_1227723 495.0271 0
ILMN_3033922 1581.796 0
ILMN_3092673 5416.661 0
ILMN_2730714 3357.711 0
ILMN_3162224 1850.027 0
ILMN_2816356 207.4371 0.01503759
ILMN_2808939 1132.56 0
ILMN_2634564 561.0087 0
ILMN_1216623 579.6764 0
ILMN_1215157 732.0935 0
ILMN_1228777 169.8864 0.1566416
ILMN_2737647 166.9406 0.1954887
ILMN_1216425 138.285 0.9448621
ILMN_2734484 684.9845 0
ILMN_2652961 153.035 0.5075188
ILMN_2952292 195.1969 0.02380952

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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