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Sample GSM651522 Query DataSets for GSM651522
Status Public on Mar 15, 2011
Title CAST_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: CAST
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
CAST_hippo_pval

Data table
ID_REF VALUE CAST_hippo_pval
ILMN_1248788 158.1263 0.273183
ILMN_2707227 171.2922 0.07769424
ILMN_2896528 6376.837 0
ILMN_2721178 1437.753 0
ILMN_1227723 584.5121 0
ILMN_3033922 1944.037 0
ILMN_3092673 5548.163 0
ILMN_2730714 5625.286 0
ILMN_3162224 3031.202 0
ILMN_2816356 168.9635 0.1027569
ILMN_2808939 1639.93 0
ILMN_2634564 474.916 0
ILMN_1216623 1385.464 0
ILMN_1215157 2250.219 0
ILMN_1228777 141.2949 0.7531328
ILMN_2737647 143.4363 0.6942356
ILMN_1216425 145.1765 0.6315789
ILMN_2734484 969.1416 0
ILMN_2652961 149.0784 0.4887218
ILMN_2952292 156.3776 0.2982456

Total number of rows: 25697

Table truncated, full table size 719 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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