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Sample GSM651523 Query DataSets for GSM651523
Status Public on Mar 15, 2011
Title CBA_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: CBA
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
CBA_hippo_pval

Data table
ID_REF VALUE CBA_hippo_pval
ILMN_1248788 137.6162 0.4749373
ILMN_2707227 180.6753 0.02756892
ILMN_2896528 5188.388 0
ILMN_2721178 1308.151 0
ILMN_1227723 360.1295 0
ILMN_3033922 2343.527 0
ILMN_3092673 5056.642 0
ILMN_2730714 4174.131 0
ILMN_3162224 2656.132 0
ILMN_2816356 186.5128 0.02130326
ILMN_2808939 1533.658 0
ILMN_2634564 518.3493 0
ILMN_1216623 658.813 0
ILMN_1215157 868.9518 0
ILMN_1228777 159.8436 0.1077694
ILMN_2737647 143.5455 0.3233083
ILMN_1216425 133.7632 0.5601504
ILMN_2734484 1013.488 0
ILMN_2652961 126.2313 0.8195488
ILMN_2952292 220.2554 0.003759399

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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