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Sample GSM651525 Query DataSets for GSM651525
Status Public on Mar 15, 2011
Title DBA_hippo_totalRNA
Sample type RNA
 
Source name whole hippocampus
Organism Mus musculus
Characteristics gender: male
strain: DBA
tissue: whole hippocampus
Extracted molecule total RNA
Extraction protocol total RNA extracted using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 07, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
DBA_hippo_pval

Data table
ID_REF VALUE DBA_hippo_pval
ILMN_1248788 161.885 0.2919799
ILMN_2707227 177.2833 0.0726817
ILMN_2896528 4994.561 0
ILMN_2721178 1336.139 0
ILMN_1227723 420.1727 0
ILMN_3033922 2202.474 0
ILMN_3092673 6407.996 0
ILMN_2730714 3946.499 0
ILMN_3162224 2830.412 0
ILMN_2816356 185.6915 0.04135338
ILMN_2808939 1469.632 0
ILMN_2634564 611.5691 0
ILMN_1216623 717.7118 0
ILMN_1215157 992.7093 0
ILMN_1228777 165.7349 0.2255639
ILMN_2737647 168.0546 0.1854637
ILMN_1216425 149.6259 0.6741855
ILMN_2734484 538.6805 0
ILMN_2652961 157.1376 0.4185464
ILMN_2952292 220.6662 0.0112782

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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