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Sample GSM651734 Query DataSets for GSM651734
Status Public on Mar 15, 2011
Title AJ_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: AJ
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
AJ_striatum_pval

Data table
ID_REF VALUE AJ_striatum_pval
ILMN_1248788 129.3115 0.8458647
ILMN_2707227 170.8173 0.0651629
ILMN_2896528 3635.284 0
ILMN_2721178 964.7881 0
ILMN_1227723 311.4266 0
ILMN_3033922 1725.792 0
ILMN_3092673 6478.253 0
ILMN_2730714 4557.756 0
ILMN_3162224 3056.179 0
ILMN_2816356 184.6588 0.02631579
ILMN_2808939 1142.073 0
ILMN_2634564 622.5928 0
ILMN_1216623 867.3897 0
ILMN_1215157 1028.515 0
ILMN_1228777 129.7945 0.8308271
ILMN_2737647 161.535 0.1140351
ILMN_1216425 124.8564 0.9323308
ILMN_2734484 720.4691 0
ILMN_2652961 142.4999 0.4135338
ILMN_2952292 187.8203 0.02255639

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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