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Sample GSM651752 Query DataSets for GSM651752
Status Public on Mar 15, 2011
Title B6Cc3_rep2_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: B6Cc3_rep2
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
B6Cc3_rep2_striatum_pval

Data table
ID_REF VALUE B6Cc3_rep2_striatum_pval
ILMN_1248788 141.2421 0.8045112
ILMN_2707227 191.4092 0.02005013
ILMN_2896528 3890.379 0
ILMN_2721178 1040.824 0
ILMN_1227723 349.6835 0
ILMN_3033922 1597.38 0
ILMN_3092673 5699.455 0
ILMN_2730714 4923.505 0
ILMN_3162224 2312.045 0
ILMN_2816356 194.8324 0.01754386
ILMN_2808939 1272.217 0
ILMN_2634564 746.8669 0
ILMN_1216623 1035.937 0
ILMN_1215157 1276.685 0
ILMN_1228777 143.5798 0.7293233
ILMN_2737647 175.5345 0.0689223
ILMN_1216425 142.0793 0.7731829
ILMN_2734484 675.2493 0
ILMN_2652961 146.5177 0.6127819
ILMN_2952292 189.9508 0.02130326

Total number of rows: 25697

Table truncated, full table size 732 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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