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Sample GSM651753 Query DataSets for GSM651753
Status Public on Mar 15, 2011
Title B6_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: B6
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
B6_striatum_pval

Data table
ID_REF VALUE B6_striatum_pval
ILMN_1248788 133.2139 0.6591479
ILMN_2707227 186.0858 0.02506266
ILMN_2896528 4662.383 0
ILMN_2721178 1271.692 0
ILMN_1227723 355.4109 0
ILMN_3033922 2205.976 0
ILMN_3092673 7275.895 0
ILMN_2730714 5125.135 0
ILMN_3162224 2921.128 0
ILMN_2816356 173.8155 0.04511278
ILMN_2808939 1342.84 0
ILMN_2634564 737.3223 0
ILMN_1216623 722.3149 0
ILMN_1215157 1180.142 0
ILMN_1228777 133.6964 0.6453634
ILMN_2737647 171.2418 0.05639098
ILMN_1216425 124.3697 0.89599
ILMN_2734484 729.1373 0
ILMN_2652961 141.4143 0.4185464
ILMN_2952292 199.8129 0.0112782

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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