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Sample GSM651754 Query DataSets for GSM651754
Status Public on Mar 15, 2011
Title BTBR_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: BTBR
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BTBR_striatum_pval

Data table
ID_REF VALUE BTBR_striatum_pval
ILMN_1248788 148.8049 0.4962406
ILMN_2707227 176.8808 0.04385965
ILMN_2896528 4627.012 0
ILMN_2721178 952.5173 0
ILMN_1227723 328.5133 0
ILMN_3033922 891.748 0
ILMN_3092673 4740.999 0
ILMN_2730714 5212.531 0
ILMN_3162224 2149.637 0
ILMN_2816356 188.9131 0.01754386
ILMN_2808939 1205.103 0
ILMN_2634564 472.6826 0
ILMN_1216623 578.9725 0
ILMN_1215157 744.6104 0
ILMN_1228777 135.7265 0.9423559
ILMN_2737647 154.1535 0.3132832
ILMN_1216425 145.6755 0.622807
ILMN_2734484 575.3188 0
ILMN_2652961 150.2975 0.4448622
ILMN_2952292 200.7392 0.003759399

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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