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Sample GSM651779 Query DataSets for GSM651779
Status Public on Mar 15, 2011
Title BXD20/TyJ_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: BXD20/TyJ
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXD20/TyJ_striatum_pval

Data table
ID_REF VALUE BXD20/TyJ_striatum_pval
ILMN_1248788 139.1946 0.5426065
ILMN_2707227 170.4661 0.0726817
ILMN_2896528 4086.087 0
ILMN_2721178 945.7058 0
ILMN_1227723 330.6356 0
ILMN_3033922 1955.508 0
ILMN_3092673 6701.722 0
ILMN_2730714 4646.553 0
ILMN_3162224 2143.964 0
ILMN_2816356 181.2501 0.02882206
ILMN_2808939 1444.971 0
ILMN_2634564 683.204 0
ILMN_1216623 884.3055 0
ILMN_1215157 1086.474 0
ILMN_1228777 150.082 0.2756892
ILMN_2737647 157.1745 0.179198
ILMN_1216425 142.8021 0.4486215
ILMN_2734484 720.1213 0
ILMN_2652961 137.7939 0.585213
ILMN_2952292 214.4431 0.006265664

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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