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Sample GSM651800 Query DataSets for GSM651800
Status Public on Mar 15, 2011
Title BXH14_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: BXH14
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
BXH14_striatum_pval

Data table
ID_REF VALUE BXH14_striatum_pval
ILMN_1248788 138.2977 0.5388471
ILMN_2707227 178.2592 0.02506266
ILMN_2896528 3198.176 0
ILMN_2721178 763.0588 0
ILMN_1227723 325.6689 0
ILMN_3033922 1716.135 0
ILMN_3092673 6411.997 0
ILMN_2730714 5243.874 0
ILMN_3162224 2782.015 0
ILMN_2816356 187.164 0.01253133
ILMN_2808939 1257.608 0
ILMN_2634564 546.6477 0
ILMN_1216623 745.2667 0
ILMN_1215157 987.0383 0
ILMN_1228777 148.9391 0.2293233
ILMN_2737647 153.9908 0.1553885
ILMN_1216425 132.8011 0.7343358
ILMN_2734484 570.2606 0
ILMN_2652961 140.5891 0.452381
ILMN_2952292 196.367 0.005012531

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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