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Sample GSM651814 Query DataSets for GSM651814
Status Public on Mar 15, 2011
Title CBA_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: CBA
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
CBA_striatum_pval

Data table
ID_REF VALUE CBA_striatum_pval
ILMN_1248788 139.2585 0.4360902
ILMN_2707227 184.5275 0.01503759
ILMN_2896528 4770.201 0
ILMN_2721178 1041.494 0
ILMN_1227723 334.8467 0
ILMN_3033922 1564.615 0
ILMN_3092673 5946.82 0
ILMN_2730714 4157.074 0
ILMN_3162224 2829.797 0
ILMN_2816356 175.3645 0.03258145
ILMN_2808939 1344.201 0
ILMN_2634564 483.177 0
ILMN_1216623 610.1797 0
ILMN_1215157 828.492 0
ILMN_1228777 157.6278 0.1265664
ILMN_2737647 150.1158 0.226817
ILMN_1216425 124.1707 0.9047619
ILMN_2734484 748.6629 0
ILMN_2652961 143.9987 0.3408521
ILMN_2952292 189.4634 0.01253133

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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