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Sample GSM651816 Query DataSets for GSM651816
Status Public on Mar 15, 2011
Title DBA_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: DBA
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
DBA_striatum_pval

Data table
ID_REF VALUE DBA_striatum_pval
ILMN_1248788 133.868 0.7305765
ILMN_2707227 178.6649 0.03258145
ILMN_2896528 4244.709 0
ILMN_2721178 1173.155 0
ILMN_1227723 355.2596 0
ILMN_3033922 1945.647 0
ILMN_3092673 6622.843 0
ILMN_2730714 4960.867 0
ILMN_3162224 3126.376 0
ILMN_2816356 195.1642 0.01378446
ILMN_2808939 1270.88 0
ILMN_2634564 605.808 0
ILMN_1216623 731.137 0
ILMN_1215157 1080.552 0
ILMN_1228777 127.9768 0.9160401
ILMN_2737647 179.483 0.02756892
ILMN_1216425 135.4156 0.6854637
ILMN_2734484 603.2276 0
ILMN_2652961 142.3965 0.4536341
ILMN_2952292 206.5033 0.006265664

Total number of rows: 25697

Table truncated, full table size 729 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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