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Sample GSM651821 Query DataSets for GSM651821
Status Public on Mar 15, 2011
Title LPJ_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: LPJ
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
LPJ_striatum_pval

Data table
ID_REF VALUE LPJ_striatum_pval
ILMN_1248788 139.9335 0.5238096
ILMN_2707227 176.1377 0.03634085
ILMN_2896528 4802.601 0
ILMN_2721178 1183.99 0
ILMN_1227723 350.7302 0
ILMN_3033922 1508.786 0
ILMN_3092673 5206.593 0
ILMN_2730714 4743.968 0
ILMN_3162224 2856.495 0
ILMN_2816356 197.584 0.01002506
ILMN_2808939 1261.883 0
ILMN_2634564 575.1994 0
ILMN_1216623 718.1652 0
ILMN_1215157 976.5613 0
ILMN_1228777 140.8219 0.5037594
ILMN_2737647 175.668 0.03759398
ILMN_1216425 136.807 0.6265664
ILMN_2734484 867.6634 0
ILMN_2652961 133.0782 0.7706767
ILMN_2952292 192.9351 0.01253133

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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