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Sample GSM651824 Query DataSets for GSM651824
Status Public on Mar 15, 2011
Title NON_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: NON
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
NON_striatum_pval

Data table
ID_REF VALUE NON_striatum_pval
ILMN_1248788 141.3605 0.4912281
ILMN_2707227 171.0258 0.04636591
ILMN_2896528 3942.002 0
ILMN_2721178 1083.612 0
ILMN_1227723 347.0034 0
ILMN_3033922 2026.588 0
ILMN_3092673 6964.442 0
ILMN_2730714 5021.949 0
ILMN_3162224 3334.296 0
ILMN_2816356 176.8376 0.03007519
ILMN_2808939 1323.105 0
ILMN_2634564 494.7077 0
ILMN_1216623 775.5773 0
ILMN_1215157 1028.11 0
ILMN_1228777 142.2754 0.4699248
ILMN_2737647 159.2517 0.1190476
ILMN_1216425 125.1429 0.9649123
ILMN_2734484 640.9841 0
ILMN_2652961 134.6185 0.7092732
ILMN_2952292 233.8818 0

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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