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Sample GSM651825 Query DataSets for GSM651825
Status Public on Mar 15, 2011
Title NZB_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: NZB
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
NZB_striatum_pval

Data table
ID_REF VALUE NZB_striatum_pval
ILMN_1248788 138.8392 0.5250627
ILMN_2707227 182.5232 0.02506266
ILMN_2896528 4583.652 0
ILMN_2721178 1212.845 0
ILMN_1227723 320.1981 0
ILMN_3033922 1533.138 0
ILMN_3092673 6882.107 0
ILMN_2730714 4255.57 0
ILMN_3162224 2841.383 0
ILMN_2816356 188.3699 0.01879699
ILMN_2808939 1246.01 0
ILMN_2634564 580.3119 0
ILMN_1216623 717.8941 0
ILMN_1215157 996.317 0
ILMN_1228777 153.9471 0.2017544
ILMN_2737647 154.607 0.1917293
ILMN_1216425 130.439 0.8283208
ILMN_2734484 722.9657 0
ILMN_2652961 143.8029 0.3759398
ILMN_2952292 182.2397 0.02631579

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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