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Sample GSM651826 Query DataSets for GSM651826
Status Public on Mar 15, 2011
Title NZW_striatum_totalRNA
Sample type RNA
 
Source name whole striatum
Organism Mus musculus
Characteristics gender: male
strain: NZW
tissue: whole striatum
Extracted molecule total RNA
Extraction protocol total RNA extracted from flash frozen tissue using Trizol (Invitrogen) and prepared using the Qiagen Rneasy kit per manufacturers instructions, Agilent Bioanalyser used for quality control
Label biotin-16-UTP
Label protocol Illumina TotalPrep RNA, biotin-16-UTP
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Description RI mouse strain from HMDP
Data processing Data were processed using the Illumina BeadStudio software and rank-invariant normalized
 
Submission date Jan 10, 2011
Last update date Mar 15, 2011
Contact name Christopher Park
Phone 310-948-7917
Organization name UCLA
Department Molecular and Medical Pharmacology
Lab Desmond Smith
Street address 23-151 CHS, 650 Charles E. Young Drive
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE26500 Gene networks associated with conditional fear in mice identified using a systems genetics approach

Data table header descriptions
ID_REF
VALUE normalized Avg Signal data generated using Illumina BeadStudio software, non-normalized data is Avg Signal
NZW_striatum_pval

Data table
ID_REF VALUE NZW_striatum_pval
ILMN_1248788 178.8947 0.9962406
ILMN_2707227 226.3109 0.02882206
ILMN_2896528 4102.338 0
ILMN_2721178 724.0253 0
ILMN_1227723 350.3067 0
ILMN_3033922 570.7331 0
ILMN_3092673 5272.979 0
ILMN_2730714 4143.465 0
ILMN_3162224 2385.991 0
ILMN_2816356 225.0834 0.03383459
ILMN_2808939 1202.818 0
ILMN_2634564 491.8184 0
ILMN_1216623 607.653 0
ILMN_1215157 815.8474 0
ILMN_1228777 212.3759 0.1290727
ILMN_2737647 196.5041 0.4949875
ILMN_1216425 204.7432 0.2368421
ILMN_2734484 709.1361 0
ILMN_2652961 201.2811 0.3283208
ILMN_2952292 255.9268 0.003759399

Total number of rows: 25697

Table truncated, full table size 730 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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