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GEO accession:
Sample GSM66606
Query DataSets for GSM66606
Status
Public on Nov 14, 2005
Title
Vehicle-4 hour 2
Sample type
RNA
Source name
Human
Organism
Homo sapiens
Characteristics
Vehicle-4 hour 2
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Vehicle-4 hour
Data processing
Affymetrix MAS 5.0
Submission date
Jul 28, 2005
Last update date
Nov 16, 2005
Contact name
Vanita Gupta
Organization name
UMDNJ
Department
Biochemistry & Molecular Biology
Street address
185 South Orange Ave
City
Newark
State/province
NJ
ZIP/Postal code
07103
Country
USA
Platform ID
GPL96
Series (1)
GSE3040
Glucocorticoid Induced Changes in Gene Expression in Human Lens Epithelial Cells
Data table header descriptions
ID_REF
VALUE
MAS 5.0-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
160.9
P
0.002556
AFFX-BioB-M_at
322.2
P
0.00011
AFFX-BioB-3_at
128.1
P
0.000662
AFFX-BioC-5_at
473.2
P
0.000127
AFFX-BioC-3_at
292.7
P
0.000127
AFFX-BioDn-5_at
340.6
P
0.000169
AFFX-BioDn-3_at
2901.1
P
0.000195
AFFX-CreX-5_at
3854.9
P
0.000044
AFFX-CreX-3_at
6876.8
P
0.000044
AFFX-DapX-5_at
6
A
0.39692
AFFX-DapX-M_at
13.4
A
0.175328
AFFX-DapX-3_at
1.6
A
0.904333
AFFX-LysX-5_at
0.4
A
0.949771
AFFX-LysX-M_at
4.3
A
0.60308
AFFX-LysX-3_at
8.2
A
0.175328
AFFX-PheX-5_at
0.9
A
0.953518
AFFX-PheX-M_at
2.2
A
0.804734
AFFX-PheX-3_at
40.9
A
0.216524
AFFX-ThrX-5_at
3.5
A
0.760937
AFFX-ThrX-M_at
9.6
A
0.5
Total number of rows:
22283
Table truncated, full table size
583 Kbytes
.
Supplementary data files not provided
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