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Sample GSM66615 Query DataSets for GSM66615
Status Public on Nov 14, 2005
Title DEX-16 hour 2
Sample type RNA
 
Source name Human
Organism Homo sapiens
Characteristics DEX-16 hour 2
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description DEX-16 hour
Data processing Affymetrix MAS 5.0
 
Submission date Jul 28, 2005
Last update date Nov 16, 2005
Contact name Vanita Gupta
Organization name UMDNJ
Department Biochemistry & Molecular Biology
Street address 185 South Orange Ave
City Newark
State/province NJ
ZIP/Postal code 07103
Country USA
 
Platform ID GPL96
Series (1)
GSE3040 Glucocorticoid Induced Changes in Gene Expression in Human Lens Epithelial Cells

Data table header descriptions
ID_REF
VALUE MAS 5.0-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 270.3 P 0.002867
AFFX-BioB-M_at 473.2 P 0.000052
AFFX-BioB-3_at 163.9 P 0.000581
AFFX-BioC-5_at 627.6 P 0.000147
AFFX-BioC-3_at 496.9 P 0.000225
AFFX-BioDn-5_at 612.1 P 0.000081
AFFX-BioDn-3_at 3510.4 P 0.000095
AFFX-CreX-5_at 7186.2 P 0.000044
AFFX-CreX-3_at 10654.8 P 0.000044
AFFX-DapX-5_at 9.1 A 0.262827
AFFX-DapX-M_at 27.4 A 0.300606
AFFX-DapX-3_at 4.3 A 0.659339
AFFX-LysX-5_at 6.8 A 0.559354
AFFX-LysX-M_at 7.8 A 0.544587
AFFX-LysX-3_at 7.1 A 0.131361
AFFX-PheX-5_at 7 A 0.772364
AFFX-PheX-M_at 3 A 0.891021
AFFX-PheX-3_at 20.6 A 0.41138
AFFX-ThrX-5_at 5.2 A 0.824672
AFFX-ThrX-M_at 4.3 A 0.699394

Total number of rows: 22283

Table truncated, full table size 585 Kbytes.




Supplementary data files not provided

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