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Sample GSM66736 Query DataSets for GSM66736
Status Public on Jul 29, 2005
Title C. jejuni (agar vs broth) - dataset 1
Sample type RNA
 
Channel 1
Source name C. jejuni 11168 grown on agar.
Organism Campylobacter jejuni
Characteristics C. jejuni 11168 grown on agar.
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name C. jejuni grown in broth
Organism Campylobacter jejuni
Characteristics C. jejuni grown in broth
Extracted molecule total RNA
Label Cy5
 
 
Description Growth in broth was achieved by transferring stock culture to MH broth in tissue culture flasks and incubated microaerobically. Growth on agar was achieved by transferring stock culture onto MH agar plates, spreading the culture to produce a lawn, and incubation microaerobically. Cell densities in both growth conditions increased steadily up to 12 hrs and maximum cell densities were achieved at 18 hrs following which cell death starts to occur. Thus based on the growth curve C. jejuni cells at 16 hrs of incubation were used in all studies.
Data processing ArrayPro Analyser
 
Submission date Jul 28, 2005
Last update date Sep 24, 2007
Contact name John H Nash
E-mail(s) John.Nash@gmail.com
Organization name National Research Council
Department Institute for Biological Sciences
Street address 100 Sussex Drive
City Ottawa
State/province Ontario
ZIP/Postal code K1A0R6
Country Canada
 
Platform ID GPL2681
Series (1)
GSE3028 Genomic and Proteomic Characterization of Sessile and Planktonic Campylobacter jejuni NCTC 11168

Data table header descriptions
ID_REF
VALUE log2 (Net Int (Agar)/Net Int (Broth))
Int (mean) {Agar 1} Int_Mean_Ch1
Int (mean) {Broth 1} Int_Mean_Ch2
Int (med) {Agar 1} Int_Med_Ch1
Int (med) {Broth 1} Int_Med_Ch2
BG (mean) {Agar 1} BG_Mean_Ch1
BG (mean) {Broth 1} BG_Mean_Ch2
BG (med) {Agar 1} BG_Med_Ch1
BG (med) {Broth 1} BG_Med_Ch2
Flag All Ignored Cells

Data table
ID_REF VALUE Int (mean) {Agar 1} Int (mean) {Broth 1} Int (med) {Agar 1} Int (med) {Broth 1} BG (mean) {Agar 1} BG (mean) {Broth 1} BG (med) {Agar 1} BG (med) {Broth 1} Flag
1 267.5 172.4 96 21 233.59 129.23 76 14 1
2 291.44 188.71 134 38 251.85 136.17 82 16 1
3 420.42 338.62 218 148 251.39 125.67 94 13 1
4 453.71 387.43 289 178 254.42 125.49 98 13 1
5 244.49 216.02 90 59 253.42 126.92 112 17 1
6 320.42 266.45 192 61 268.32 136.02 116 14 1
7 410.99 310.72 228 111 250.49 123 116 14 1
8 438.15 322.45 292 168 238.74 131.05 98 14 1
9 1327.95 1160.13 1142 1077 262.64 137.8 114 18 1
10 1207.94 1072.54 959 850 260.65 152.39 106 21 1
11 2586.58 2898.47 2377 2117 262 137.86 102 21 1
12 2664.42 2910.56 2472 2690 289.24 157.68 124 16 1
13 476.47 385.21 292 229 237.4 141.35 84 18 1
14 770.03 491.63 593 412 232.94 137.82 84 18 1
15 718.94 1234.4 464 850 255.93 134.94 104 17 1
16 828.85 1317.45 624 1095 258.93 143.36 108 16 1
17 1000.49 1152.64 850 962 263.52 151.93 102 21 1
18 932 1095.45 758 1013 277.55 139.88 128 22 1
19 417.25 419.4 264 214 253.57 139.9 121 18 1
20 710.71 661.97 548 537 254.69 140.65 124 13 1

Total number of rows: 4608

Table truncated, full table size 263 Kbytes.




Supplementary data files not provided

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