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Sample GSM669562 Query DataSets for GSM669562
Status Public on Mar 01, 2011
Title WT BMDMs IFNb 3hr
Sample type RNA
 
Source name Bone marrow derived macrophages
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: BMDM
genotype/variation: wild type
agent: IFNb
time: 3hr
Treatment protocol BMDMs were stimulated with LPS, CpG or IFNb
Growth protocol BMDMs were cultured in L929 cell conditioned medium for 5 to 8 days
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from BMDMs with Rneasy columns (Qiagen)
Label biotin
Label protocol Biotinylated cRNA was prepared with the Ambion Message Amp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description BMDM expression in response to LPS, CpG or IFNb
Data processing Quantile normalized using Illumina Inc. BeadStudio
 
Submission date Feb 07, 2011
Last update date Mar 01, 2011
Contact name Alexander Hoffmann
E-mail(s) ahoffmann@ucsd.edu
Phone 858-822-4670
URL http://signalingsystems.ucsd.edu/
Organization name UCSD
Department Chemistry and Biochemistry
Lab UCSD Signaling Systems Laboratory
Street address UCSD m/c 0375, NSB 3318 9500, Gilman Dr
City La Jolla
State/province CA
ZIP/Postal code 92093-0375
Country USA
 
Platform ID GPL6885
Series (1)
GSE27112 The specifcity of innate immune response is enforced by repression of interferon-response elements by NFkB p50

Data table header descriptions
ID_REF
VALUE Quantile normalized signal

Data table
ID_REF VALUE
ILMN_1212607 60
ILMN_1212612 37.7
ILMN_1212619 71.8
ILMN_1212628 39.1
ILMN_1212632 36.7
ILMN_1212636 1849.6
ILMN_1212637 574.8
ILMN_1212645 85.5
ILMN_1212648 241.3
ILMN_1212653 90.7
ILMN_1212672 145.9
ILMN_1212682 88.4
ILMN_1212683 32.1
ILMN_1212685 45
ILMN_1212692 48.6
ILMN_1212693 112.1
ILMN_1212695 98.7
ILMN_1212698 34.8
ILMN_1212702 42
ILMN_1212703 101.7

Total number of rows: 25697

Table truncated, full table size 457 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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