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Sample GSM673404 Query DataSets for GSM673404
Status Public on Dec 01, 2012
Title heart_Scn5a-1798insD/+ mutant [4700266035_D]
Sample type RNA
Source name left ventricle_free-wall
Organism Mus musculus
Characteristics tissue: cardiac
background strain: F2-(129P2/OlaHsdxFVBN/J)
genotype: Scn5a1798insD/+
Treatment protocol None
Growth protocol All mice were supplied with the same SDS diet (SDS CRM(E) PL; Special Diets Services, UK) and water ad libitum and maintained on a 12-hour light/dark cycle in a temperature and humidity controlled environment.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the QIAGEN RNeasy mini kit. Total RNA yield and purity (260nm:280nm) were determined spectrophotometrically. The integrity (RIN>9.0) of the re-suspended total RNA was determined using the RNA Nano Chip Kit on the Bioanalyzer 2100 and the 2100 Expert software (Agilent).
Label biotin
Label protocol Synthesis, amplification and purification of anti-sense RNA was performed using the Illumina TotalPrep RNA Amplification Kit (Ambion) following the Illumina Sentrix Array Matrix expression protocol.
Hybridization protocol A total of 750 ng biotinylated cRNA was hybridized in accordance with standard Illumina protocols.
Scan protocol Standard Illumina scan protocol
Description F2 hybrid
Data processing Illumina’s default pre-processing steps were performed using beadarray. A variance-stabilization transformation was applied to the summarized data and the resulting data was quantile normalized.
Submission date Feb 11, 2011
Last update date Dec 01, 2012
Contact name Brendon Paul Scicluna
Organization name Academic Medical Center
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105AZ
Country Netherlands
Platform ID GPL6885
Series (1)
GSE27236 Gene expression analysis of cardiac left-ventricle tissue from hybrid mice harboring the Scn5a-1798insD/+ mutation

Data table header descriptions
Detection Pval 4700266035_D

Data table
ID_REF VALUE Detection Pval 4700266035_D
ILMN_1250052 7.928203539 0.05511811
ILMN_3122480 7.847513606 0.351706037
ILMN_2599935 8.491454242 0
ILMN_2675543 7.887135823 0.152230971
ILMN_2686883 7.817779455 0.6167979
ILMN_2751818 7.808379197 0.721784777
ILMN_2728634 7.879997048 0.173228346
ILMN_3040515 7.844930383 0.37007874
ILMN_2711608 7.832624703 0.485564304
ILMN_1232875 7.782319849 0.94488189
ILMN_1258507 7.811682319 0.683727034
ILMN_2746142 7.804100708 0.778215223
ILMN_1252690 8.059586373 0
ILMN_2655499 7.805477595 0.755905512
ILMN_1252870 7.905470338 0.098425197
ILMN_1248179 7.784773696 0.934383202
ILMN_2649955 8.148716309 0
ILMN_2628708 7.839142382 0.421259843
ILMN_3024781 7.844471587 0.371391076
ILMN_2705628 7.819098951 0.604986877

Total number of rows: 25697

Table truncated, full table size 829 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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