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Sample GSM673498 Query DataSets for GSM673498
Status Public on Jan 15, 2013
Title 24-31chr-62
Sample type RNA
 
Source name 24-31chr diagnosis sample. RNA extracted from tumor cells obtained at diagnosis.
Organism Homo sapiens
Characteristics all subtype: Near haploid karyotype
Treatment protocol None
Growth protocol RNA was extracted from cryopreserved mononuclear cell preparations of diagnostic bone marrow or peripheral blood from ALL cases
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix 3’IVT Express protocol starting with 100 ng of total RNA (GeneChip 3’ IVT Express Kit 702646 Rev. 8, 2008-2010, Affymetrix)
 
Hybridization protocol Following fragmentation, 5 microgram of cRNA was hybridized for 16 hr at 45C on each array. GeneChips were washed and stained in the Affymetrix GeneTitan system.
Scan protocol GeneChips were scanned using the Affymetrix GeneTitan system.
Description Sample name: SJHYPO062
Data processing Data were background adjusted, normalized and summarized by the RMA method. The Bioconductor package was used for this analysis.
 
Submission date Jul 17, 2012
Last update date Jan 15, 2013
Contact name Linda Holmfeldt
Organization name St. Jude Children's Research Hospital
Department Pathology
Street address 262 Danny Thomas Place
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platform ID GPL13158
Series (1)
GSE27237 The Genetic Basis of Hypodiploid Acute Lymphoblastic Leukemia

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2 scale)

Data table
ID_REF VALUE
1007_PM_s_at 5.315879695
1053_PM_at 6.647415661
117_PM_at 3.735531836
121_PM_at 5.580217112
1255_PM_g_at 2.467931559
1294_PM_at 8.385521634
1316_PM_at 4.522491397
1320_PM_at 3.181908661
1405_PM_i_at 4.20328831
1431_PM_at 3.024447124
1438_PM_at 2.724140241
1487_PM_at 5.19149925
1494_PM_f_at 3.647260582
1552256_PM_a_at 8.937840027
1552257_PM_a_at 6.765451688
1552258_PM_at 3.445412377
1552261_PM_at 3.224770793
1552263_PM_at 7.269887364
1552264_PM_a_at 7.788443176
1552266_PM_at 2.48667467

Total number of rows: 54715

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM673498_SJHYPO062_D_HTU133PM.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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