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Sample GSM673537 Query DataSets for GSM673537
Status Public on Jan 15, 2013
Title 32-39chr-68
Sample type RNA
 
Source name 32-39chr diagnosis sample. RNA extracted from tumor cells obtained at diagnosis.
Organism Homo sapiens
Characteristics all subtype: Low hypodiploid karyotype
Treatment protocol None
Growth protocol RNA was extracted from cryopreserved mononuclear cell preparations of diagnostic bone marrow or peripheral blood from ALL cases
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix 3’IVT Express protocol starting with 100 ng of total RNA (GeneChip 3’ IVT Express Kit 702646 Rev. 8, 2008-2010, Affymetrix)
 
Hybridization protocol Following fragmentation, 5 microgram of cRNA was hybridized for 16 hr at 45C on each array. GeneChips were washed and stained in the Affymetrix GeneTitan system.
Scan protocol GeneChips were scanned using the Affymetrix GeneTitan system.
Description Sample name: SJHYPO068
Data processing Data were background adjusted, normalized and summarized by the RMA method. The Bioconductor package was used for this analysis.
 
Submission date Jul 17, 2012
Last update date Jan 15, 2013
Contact name Linda Holmfeldt
Organization name St. Jude Children's Research Hospital
Department Pathology
Street address 262 Danny Thomas Place
City Memphis
State/province Tennessee
ZIP/Postal code 38105
Country USA
 
Platform ID GPL13158
Series (1)
GSE27237 The Genetic Basis of Hypodiploid Acute Lymphoblastic Leukemia

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2 scale)

Data table
ID_REF VALUE
1007_PM_s_at 6.030215996
1053_PM_at 8.237732508
117_PM_at 3.309369355
121_PM_at 4.710152973
1255_PM_g_at 2.319132972
1294_PM_at 7.563994862
1316_PM_at 4.36586867
1320_PM_at 2.669298136
1405_PM_i_at 8.606687396
1431_PM_at 3.287078814
1438_PM_at 2.868761816
1487_PM_at 5.826329871
1494_PM_f_at 2.936418617
1552256_PM_a_at 7.837735098
1552257_PM_a_at 7.324246244
1552258_PM_at 3.204560023
1552261_PM_at 3.340884897
1552263_PM_at 9.628391658
1552264_PM_a_at 9.643444366
1552266_PM_at 2.376746744

Total number of rows: 54715

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM673537_SJHYPO068_D_HTU133PM.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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