GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM67375 Query DataSets for GSM67375
Status Public on Sep 26, 2005
Title del337TR replicate 7
Sample type RNA
Source name Mouse heart
Organism Mus musculus
Characteristics deletion in 337TR
Extracted molecule total RNA
Extraction protocol Total mRNA was extracted from the frozen heart tissue using the RNeasy fibrous tissue Kit from QIAGEN (Chatsworth, CA). Contaminating DNA was removed by deoxyribonuclease I digestion of the RNA preparation when still bound to the column. An average of 27ug of total RNA was obtained from 20mg of frozen mouse heart tissue.
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description deletion in 337TR
Data processing Robust Multichip Analysis (RMA)
Submission date Aug 05, 2005
Last update date Sep 26, 2005
Contact name Norman Buroker
Organization name Seattle Children's Hospital
Lab Portman
Street address 4800 Sand Point Way N.E.
City Seattle
State/province WA
ZIP/Postal code 98105
Country USA
Platform ID GPL1261
Series (1)
GSE3067 Resistance to thyroid hormone (RTH) and PPARa activation

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 231.1 P 0.000754
AFFX-BioB-M_at 341.8 P 0.00034
AFFX-BioB-3_at 201.1 P 0.000662
AFFX-BioC-5_at 601.4 P 0.00011
AFFX-BioC-3_at 518.3 P 0.00007
AFFX-BioDn-5_at 730.1 P 0.000044
AFFX-BioDn-3_at 3469.3 P 0.000081
AFFX-CreX-5_at 8425.2 P 0.000044
AFFX-CreX-3_at 10059.4 P 0.000044
AFFX-DapX-5_at 6.4 A 0.672921
AFFX-DapX-M_at 38.7 A 0.239024
AFFX-DapX-3_at 59.9 A 0.354441
AFFX-LysX-5_at 5.2 A 0.699409
AFFX-LysX-M_at 47.1 A 0.382589
AFFX-LysX-3_at 27.1 A 0.185089
AFFX-PheX-5_at 1215.5 P 0.000044
AFFX-PheX-M_at 1563.7 P 0.000052
AFFX-PheX-3_at 2862.8 P 0.000044
AFFX-ThrX-5_at 7.2 A 0.937071
AFFX-ThrX-M_at 2 A 0.978107

Total number of rows: 45101

Table truncated, full table size 1205 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap