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Sample GSM67378 Query DataSets for GSM67378
Status Public on Sep 26, 2005
Title Control with WY14643 replicate 3
Sample type RNA
 
Source name Mouse heart
Organism Mus musculus
Characteristics Control treated with WY14643
Extracted molecule total RNA
Extraction protocol Total mRNA was extracted from the frozen heart tissue using the RNeasy fibrous tissue Kit from QIAGEN (Chatsworth, CA). Contaminating DNA was removed by deoxyribonuclease I digestion of the RNA preparation when still bound to the column. An average of 27ug of total RNA was obtained from 20mg of frozen mouse heart tissue.
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Control treated with WY14643
Data processing Robust Multichip Analysis (RMA)
 
Submission date Aug 05, 2005
Last update date Sep 26, 2005
Contact name Norman Buroker
E-mail(s) Norman.Buroker@seattlechildrens.org
Organization name Seattle Children's Hospital
Lab Portman
Street address 4800 Sand Point Way N.E.
City Seattle
State/province WA
ZIP/Postal code 98105
Country USA
 
Platform ID GPL1261
Series (1)
GSE3067 Resistance to thyroid hormone (RTH) and PPARa activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 277.3 P 0.000754
AFFX-BioB-M_at 489.7 P 0.000127
AFFX-BioB-3_at 261.3 P 0.000509
AFFX-BioC-5_at 682.2 P 0.00011
AFFX-BioC-3_at 601.5 P 0.000044
AFFX-BioDn-5_at 688.1 P 0.000044
AFFX-BioDn-3_at 3704.6 P 0.000081
AFFX-CreX-5_at 9430 P 0.000052
AFFX-CreX-3_at 10053.1 P 0.000044
AFFX-DapX-5_at 12.8 A 0.147939
AFFX-DapX-M_at 40.6 M 0.062929
AFFX-DapX-3_at 45.1 P 0.046482
AFFX-LysX-5_at 9038 P 0.000044
AFFX-LysX-M_at 12244.6 P 0.000044
AFFX-LysX-3_at 12938.6 P 0.000044
AFFX-PheX-5_at 3.2 A 0.897835
AFFX-PheX-M_at 2.3 A 0.957038
AFFX-PheX-3_at 16.5 A 0.52976
AFFX-ThrX-5_at 3.7 A 0.904333
AFFX-ThrX-M_at 9.4 A 0.574038

Total number of rows: 45101

Table truncated, full table size 1202 Kbytes.




Supplementary data files not provided

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