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Sample GSM67379 Query DataSets for GSM67379
Status Public on Sep 26, 2005
Title Control with WY14643 replicate 4
Sample type RNA
 
Source name Mouse heart
Organism Mus musculus
Characteristics Control treated with WY14643
Extracted molecule total RNA
Extraction protocol Total mRNA was extracted from the frozen heart tissue using the RNeasy fibrous tissue Kit from QIAGEN (Chatsworth, CA). Contaminating DNA was removed by deoxyribonuclease I digestion of the RNA preparation when still bound to the column. An average of 27ug of total RNA was obtained from 20mg of frozen mouse heart tissue.
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Control treated with WY14643
Data processing Robust Multichip Analysis (RMA)
 
Submission date Aug 05, 2005
Last update date Sep 26, 2005
Contact name Norman Buroker
E-mail(s) Norman.Buroker@seattlechildrens.org
Organization name Seattle Children's Hospital
Lab Portman
Street address 4800 Sand Point Way N.E.
City Seattle
State/province WA
ZIP/Postal code 98105
Country USA
 
Platform ID GPL1261
Series (1)
GSE3067 Resistance to thyroid hormone (RTH) and PPARa activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 276.9 P 0.000754
AFFX-BioB-M_at 507.3 P 0.000127
AFFX-BioB-3_at 261.9 P 0.000195
AFFX-BioC-5_at 755.8 P 0.000147
AFFX-BioC-3_at 580.8 P 0.000044
AFFX-BioDn-5_at 726.6 P 0.000044
AFFX-BioDn-3_at 3796.6 P 0.000127
AFFX-CreX-5_at 9243.5 P 0.000052
AFFX-CreX-3_at 9698.6 P 0.000044
AFFX-DapX-5_at 10.6 A 0.327079
AFFX-DapX-M_at 38.1 A 0.313723
AFFX-DapX-3_at 30.2 A 0.116113
AFFX-LysX-5_at 8861.5 P 0.000044
AFFX-LysX-M_at 11905.8 P 0.000044
AFFX-LysX-3_at 13560.5 P 0.000044
AFFX-PheX-5_at 3.5 A 0.794268
AFFX-PheX-M_at 1.7 A 0.981719
AFFX-PheX-3_at 24.6 A 0.39692
AFFX-ThrX-5_at 5.3 A 0.783476
AFFX-ThrX-M_at 4.1 A 0.852061

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary data files not provided

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