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Sample GSM67799 Query DataSets for GSM67799
Status Public on Nov 30, 2005
Title MicMa079_Agilent
Sample type RNA
 
Channel 1
Source name MicMa079_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.132916872 293.8221 399.0261 157.6207 111.9655
4 -0.010901766 294.7608 287.4537 158.4333 96.13333
5 0.182119182 921.1277 1401.003 250.5 261.8125
6 0.143209921 114.3183 158.9738 130.6563 77.1875
8 0.15320142 105.4654 150.076 129.4286 76.03571
9 0.069772796 360.1746 422.947 168.4333 116.0667
10 -0.021472497 830.6832 790.6112 238.8387 171.4516
12 0.070593684 2768.333 3256.957 520.8214 546.5714
13 0.053306251 96.26793 108.8398 128.8 70.83333
15 -0.045655755 41.6135 37.46093 119.8966 61.75862
16 -0.057885254 54.27942 47.50616 122.3103 63.06897
17 0.043239178 301.6831 333.2654 160.9643 103.3214
18 0.150548062 811.6206 1147.892 236.3214 224.5357
19 0.323668384 3459.071 7288.327 621.4643 1158.107
20 -0.095973889 1564.55052 1247.75647 363.85512 244.18321
22 0.617116733 29.00743 120.1229 118.4 72
23 -0.326547188 3542.7358 1664.1393 662.85491 311.80391
24 0.109403339 2210.472 2843.73 441.5333 483.4
25 -0.127825225 6001.608 4471.388 996.7241 733
26 0.116004727 487.8246 637.1893 189.931 148.5172

Total number of rows: 40492

Table truncated, full table size 2077 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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