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Sample GSM67800 Query DataSets for GSM67800
Status Public on Nov 30, 2005
Title MicMa085_Agilent
Sample type RNA
 
Channel 1
Source name MicMa085_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.240853825 223.4176 389.0194 142.7931 119.4828
4 0.056360294 282.5095 321.6573 151.5714 109.9643
5 0.01704104 942.1937 979.8988 243.6774 207.3871
6 -0.112993804 95.72015 73.79205 126.7333 73.66667
8 0.26199326 79.27248 144.9158 124.3077 83.57692
9 0.169722483 391.5025 578.7047 168 148.0435
10 0.126350667 696.4162 931.5787 210.8621 200.2069
12 0.084497461 2735.528 3323.063 487.4483 564.0345
13 -0.154340169 141.516 99.18944 135.1667 77.875
15 -0.21403311 127.1967 77.70389 133.96 74.88
16 -0.203468057 54.88118 34.35227 124.069 68.68966
17 0.051915008 344.5043 388.2484 164.0417 120.5417
18 0.21997454 754.1394 1251.487 221.0769 247.8462
19 -0.012160809 3219.275 3130.382 555.2414 535.8966
20 -0.168577895 1482.3025 1005.58907 335.9302 213.30453
22 1.064231923 14.11378 163.6347 113 75.26923
23 -0.447181877 3208.0493 1149.07904 580.05087 238.59527
24 0.266395446 1969.454 3636.983 386.7143 610.5
25 0.093427419 5722.795 7096.36 900.1071 1131.357
26 0.212915629 395.3702 645.5347 173.3043 158.6522

Total number of rows: 40492

Table truncated, full table size 2080 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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