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Sample GSM67802 Query DataSets for GSM67802
Status Public on Nov 30, 2005
Title MicMa091_Agilent
Sample type RNA
 
Channel 1
Source name MicMa091_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.114013823 306.1358 398.0411 149.4815 97.22222
4 -0.203896634 356.2753 222.7866 156.1034 78.65517
5 -0.068985309 1057.194 901.9228 246.9333 149.5
6 0.025703677 132.9688 141.0761 127.8621 69.75862
8 -0.136647126 55.29979 40.37163 118 59.2
9 0.090956479 346.9323 427.7611 154.7857 100.5
10 0.016668463 713.3819 741.2941 202.0357 133.2857
12 0.276468452 3818.576 7217.22 593.4444 825.7037
13 -0.126883212 108.0712 80.69129 124.9643 63.53571
15 0 35.96786 41.91898 114.4667 58.73333
16 -0.16921755 57.32876 38.82889 118.4828 57.51724
17 0.048604761 315.1858 352.5099 150.9333 92.6
18 -0.016136835 813.3696 783.7022 215.2222 137.7037
19 0.082295886 4726.399 5712.5 708.4828 665.1034
20 0.06477416 1898.8861 2202.1455 353.45672 286.05125
22 0.073532818 44.89893 53.1825 116.8214 60.78571
23 -0.051958902 4842.5085 4292.9195 723.28573 514.14638
24 0.100721922 2600.861 3279.737 444 401.0968
25 -0.160464693 7543.818 5213.465 1062.115 613.6538
26 0.063517088 476.9676 552.085 171.7407 113.9259

Total number of rows: 40492

Table truncated, full table size 2075 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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