NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM67806 Query DataSets for GSM67806
Status Public on Nov 30, 2005
Title MicMa146_Agilent
Sample type RNA
 
Channel 1
Source name MicMa146_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.111523371 206.5217 266.9864 124.6667 95.03704
4 0.011693121 179.2871 184.1799 121.3667 81.33333
5 0.340137211 751.7129 1645.088 199.75 317.9643
6 1.747121853 4.890568 273.2003 95.5 59.83333
8 1.986886281 5.05841 490.7952 92.62069 65.65517
9 0.735318816 24.67407 134.1404 101 69.58065
10 0.237814408 159.3579 275.5422 118.3929 96.35714
12 0.194439726 2781.124 4351.711 469.3333 775.9
13 0.91506993 19.04566 156.6268 97.58621 69.06897
15 0.780917853 15.22026 91.90515 97.17241 60.86207
16 0 4.646126 167.0605 94.36667 52.96667
17 0.071645912 169.3014 199.667 120.1538 84.38462
18 0.483206499 323.1112 983.0112 140.2 213.6
19 0.048939656 3719.236 4162.875 594.1667 746.5667
20 -0.103359794 1351.6832 1062.46284 282.25682 226.4559
22 0.761577901 23.67413 136.7263 104.9643 72.39286
23 -0.434184343 3459.1179 1274.2759 569.06585 263.9067
24 0.069359108 1815.52 2129.904 344.0333 401.3333
25 0.029883385 5531.878 5925.922 838.9231 1037.885
26 0.051959878 206.7793 233.0596 125.1429 90.57143

Total number of rows: 40492

Table truncated, full table size 2066 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap