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Sample GSM67810 Query DataSets for GSM67810
Status Public on Nov 30, 2005
Title MicMa267_Agilent
Sample type RNA
 
Channel 1
Source name MicMa267_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 -0.053913836 350.5231 309.6014 101.8571 79.64286
4 -0.0702048 405.9333 345.3424 107.2 83.23333
5 0.195425085 950.047 1489.945 162.1111 192.4074
6 -0.409128563 130.4163 50.83973 81.55556 53.88889
8 -0.10988326 64.96264 50.44062 75.1 53
9 -0.068111694 126.587 108.2125 81.10345 59.48276
10 -0.010170484 175.1223 171.0689 85.66667 65.8
12 0.264810798 3398.845 6253.774 415.4138 631.7586
13 -0.530028716 155.6285 45.9262 84.48276 53.41379
15 -0.306290632 104.295 51.51966 79.58065 51.32258
16 -0.227507671 82.02682 48.57896 77.22581 53.87097
17 -0.141964884 147.4837 106.3602 83.57143 59.53571
18 0.054890059 314.3705 356.7236 99.17241 84.65517
19 -0.084760832 3818.645 3141.583 457.9643 342.5714
20 -0.083665823 2161.7512 1789.32515 290.91477 218.92473
22 -0.036047667 59.65855 54.90666 75.34483 53.82759
23 -0.031445038 5537.2266 5176.5744 642.00183 533.44433
24 0.012582782 1730.474 1781.344 243.5862 217.6897
25 -0.086927766 6237.185 5105.765 707.4286 523.9643
26 -0.122428023 387.1728 292.0632 106.6897 78.48276

Total number of rows: 40492

Table truncated, full table size 2066 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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