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Sample GSM67811 Query DataSets for GSM67811
Status Public on Nov 30, 2005
Title MicMa632_Agilent
Sample type RNA
 
Channel 1
Source name MicMa632_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.106867384 287.3403 367.5055 102.1379 88.37931
4 -0.087562323 376.8144 308.0102 111.8214 82.14286
5 0.068533159 1075.105 1258.88 190.9355 178.4839
6 -0.43999979 154.3127 56.0276 88.33333 55.44444
8 -0.153867582 131.3336 92.15272 85.78571 59.21429
9 -0.037415345 241.9532 221.9811 97.55172 73.03448
10 -0.051042882 364.1846 323.8014 110.6333 83.93333
12 0.326580366 2475.699 5251.438 350.1667 581.5333
13 -0.11567982 141.7112 108.5737 87.03333 61.03333
15 -0.10634983 74.3439 58.19631 79.75 55.8125
16 -0.201766554 73.54851 46.21759 79.93548 50.12903
17 -0.165222503 233.183 159.3949 97 66.55172
18 0.148018161 569.6331 800.9647 133.6452 133.7097
19 0.195857037 3552.558 5576.968 469.5161 617.7742
20 -0.092249098 2309.0541 1882.04774 334.21704 240.30414
22 -0.201624252 107.6 67.63756 83.7 56.93333
23 -0.423138226 5939.546 2252.79441 740.92296 280.05383
24 0.312267277 1415.996 2906.225 232.2593 342.4815
25 -0.005103728 4250.59 4200.93 548.6296 477.1852
26 -0.061301962 226.9289 197.0552 96.6 70.7

Total number of rows: 40492

Table truncated, full table size 2065 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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