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Sample GSM67812 Query DataSets for GSM67812
Status Public on Nov 30, 2005
Title MicMa709_Agilent
Sample type RNA
 
Channel 1
Source name MicMa709_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.029859632 380.4776 407.5573 105.3333 102
4 -0.292050275 409.5638 209.0602 108.8966 75.7931
5 0.035878649 1133.999 1231.661 175.7333 214.0333
6 -0.112620444 159.8885 123.3664 84.85185 64.25926
8 -0.53237773 135.1557 39.66949 83.15385 52.73077
9 -0.235160279 280.9919 163.5059 96.86207 69.72414
10 0.09058812 463.4139 570.8963 113.1379 124.4483
12 0.365630038 4121.214 9564.345 450.3 1359.833
13 -0.405936771 97.33148 38.22228 79.65517 51.2069
15 -0.01105076 49.14734 47.91255 74.22581 54.77419
16 -0.355532195 88.93765 39.22414 78.68966 52.58621
17 -0.179107931 230.6581 152.7076 92.33333 68.4
18 0.827874451 588.3116 3958.055 124.6333 579.6
19 0.019864669 5762.057 6031.735 602.7667 875.7
20 -0.034161851 2311.693 2148.6075 289.17639 339.8303
22 0.385824129 114.0433 277.2642 80.75 83.92857
23 -0.145517936 5989.5668 4291.6917 628.30326 638.86825
24 0.146131862 2132.231 2985.15 269.9643 451.8929
25 0.606121576 9080.348 36662.67 947.9 4858.167
26 -0.226475656 371.5355 220.559 106.2667 77.7

Total number of rows: 40492

Table truncated, full table size 2067 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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