NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM680024 Query DataSets for GSM680024
Status Public on Nov 01, 2012
Title IL-17A 3
Sample type RNA
 
Source name HaCaT
Organism Homo sapiens
Characteristics cell line: HaCaT
cell type: keratinocytes
Treatment protocol samples were exposed to cytokines at 200ng/ml for 12h
Growth protocol HaCaT cells were grown in DMEM medium (1.5mM Ca), supplemented with 10% FCS, p/s and glu
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Plus Mini Ki
Label biotin
Label protocol biotinylation of cRNA
 
Hybridization protocol HumanHT12 v.4 Expression BeadChip, 750ng of bitinylated cRNA used
Scan protocol Illumina iScan array scanner
Description replicate 3
101069-06
Data processing Illumina' Genomestudio v.2010.1 with default settings
 
Submission date Feb 25, 2011
Last update date Nov 01, 2012
Contact name Stephen Taylor
E-mail(s) stephen.taylor@imm.ox.ac.uk
Phone +44 1865 222640
Organization name CBRG
Street address Headington
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platform ID GPL10558
Series (1)
GSE27533 IL-17 downregulates filaggrin and affects epidermal barrier function gene expression; potential role in the pathogenesis of atopic eczema

Data table header descriptions
ID_REF
VALUE using the Bioconductor package 'lumi' lumiN and lumiT was used to normalize and transform the data

Data table
ID_REF VALUE
ILMN_1762337 7.40418263
ILMN_2055271 7.717681286
ILMN_1736007 7.26267757
ILMN_2383229 7.176003385
ILMN_1806310 7.347615959
ILMN_1779670 7.277476466
ILMN_1653355 7.49280357
ILMN_1717783 7.129539194
ILMN_1705025 7.325421258
ILMN_1814316 7.281130441
ILMN_2359168 7.290712324
ILMN_1731507 7.152143541
ILMN_1787689 7.310302251
ILMN_3241953 7.28707846
ILMN_1745607 7.125303991
ILMN_2136495 7.328438091
ILMN_1668111 7.406983967
ILMN_2295559 7.335207811
ILMN_1735045 7.358474025
ILMN_1680754 7.358105521

Total number of rows: 47230

Table truncated, full table size 1148 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap