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Sample GSM680181 Query DataSets for GSM680181
Status Public on Feb 28, 2011
Title Control-6
Sample type RNA
 
Source name Colorectal, control
Organism Homo sapiens
Characteristics tissue: colorectal cancer
microsatellite phenotype: microsatellite stability
hla expression: HLA+
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (Qiagen) + QIAshredder.
Label Biotin
Label protocol GeneChip 3’ IVT Express kit.
 
Hybridization protocol Samples were hybridized to Affymetrix HT HG-133+PM 24 Array Plate GeneChips using the Affymetrix standard hybridization protocol.
Scan protocol Gene Titan System.
Description MSS/HLA+
Data processing Data were normalized using the RMA method included in the R Bioconductor package limma.
 
Submission date Feb 27, 2011
Last update date Feb 28, 2011
Contact name Francisco Ruiz-Cabello
Organization name Hospital Universitario Virgen de las Nieves
Street address Avenida Fuerzas Armadas 2
City Granada
ZIP/Postal code 18014
Country Spain
 
Platform ID GPL13158
Series (1)
GSE27544 Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape

Data table header descriptions
ID_REF
VALUE RMA-normalized signal

Data table
ID_REF VALUE
1007_PM_s_at 9.75544
1053_PM_at 6.65893
117_PM_at 3.41178
121_PM_at 5.90487
1255_PM_g_at 2.56639
1294_PM_at 6.74004
1316_PM_at 4.62528
1320_PM_at 3.42797
1405_PM_i_at 8.07119
1431_PM_at 2.90186
1438_PM_at 7.26797
1487_PM_at 7.18268
1494_PM_f_at 3.06746
1552256_PM_a_at 7.97318
1552257_PM_a_at 8.32966
1552258_PM_at 3.45657
1552261_PM_at 2.87952
1552263_PM_at 6.67801
1552264_PM_a_at 6.65155
1552266_PM_at 3.2433

Total number of rows: 54715

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM680181.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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