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Sample GSM680188 Query DataSets for GSM680188
Status Public on Feb 28, 2011
Title MSI-5
Sample type RNA
 
Source name Colorectal, MSI
Organism Homo sapiens
Characteristics tissue: colorectal cancer
microsatellite phenotype: high-level microsatellite instability
hla expression: HLA-
Extracted molecule total RNA
Extraction protocol RNeasy mini kit (Qiagen) + QIAshredder.
Label Biotin
Label protocol GeneChip 3’ IVT Express kit.
 
Hybridization protocol Samples were hybridized to Affymetrix HT HG-133+PM 24 Array Plate GeneChips using the Affymetrix standard hybridization protocol.
Scan protocol Gene Titan System.
Description MSI/HLA-
Data processing Data were normalized using the RMA method included in the R Bioconductor package limma.
 
Submission date Feb 27, 2011
Last update date Feb 28, 2011
Contact name Francisco Ruiz-Cabello
Organization name Hospital Universitario Virgen de las Nieves
Street address Avenida Fuerzas Armadas 2
City Granada
ZIP/Postal code 18014
Country Spain
 
Platform ID GPL13158
Series (1)
GSE27544 Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape

Data table header descriptions
ID_REF
VALUE RMA-normalized signal

Data table
ID_REF VALUE
1007_PM_s_at 9.29177
1053_PM_at 7.28397
117_PM_at 6.32264
121_PM_at 5.60558
1255_PM_g_at 2.66777
1294_PM_at 7.14395
1316_PM_at 3.92895
1320_PM_at 3.32964
1405_PM_i_at 10.2948
1431_PM_at 2.8575
1438_PM_at 5.18428
1487_PM_at 6.2868
1494_PM_f_at 3.44743
1552256_PM_a_at 6.86331
1552257_PM_a_at 8.08827
1552258_PM_at 3.54918
1552261_PM_at 2.95597
1552263_PM_at 7.02358
1552264_PM_a_at 7.00437
1552266_PM_at 2.97562

Total number of rows: 54715

Table truncated, full table size 1159 Kbytes.




Supplementary file Size Download File type/resource
GSM680188.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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