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Sample GSM683771

Query DataSets for GSM683771

Status

Public on Mar 01, 2011

Title

Myers_T-47D_2_DMSO_0.02pct_24hr_HudsonAlpha

Sample type

SRA

Source name

T-47D

Organism

Homo sapiens

Characteristics

cell: T-47D
cell organism: Human
cell description: T-47D is a human epithelial cell line derived from an mammary ductal carcinoma.
cell karyotype: hypotriploid
cell sex: F
replicate: 2
treatment: DMSO_0.02pct_24hr
treatment description: 24h,0.02% DMSO (Myers)
obtainedby: HudsonAlpha

Biomaterial provider

ATCC

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:T47D_Myers_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Description

Reduced Representation

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

Mar 01, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX066271

BioSample

SAMN00621752

Supplementary file	Size	Download	File type/resource
GSM683771_hg19_wgEncodeHaibMethylRrbsT47dDmso224hHaibSitesRep2.bedRrbs.gz	15.4 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA