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Sample GSM683790 Query DataSets for GSM683790
Status Public on Mar 01, 2011
Title Myers_PanIslets_3_None_Duke
Sample type SRA
 
Source name PanIslets
Organism Homo sapiens
Characteristics cell: PanIslets
cell organism: Human
cell description: human pancreatic islets
cell sex: M
replicate: 3
treatment: None
obtainedby: Duke
Biomaterial provider Refer to protocol documents for differing sources
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Duke/UNC/UTA/EBI_Open_Chromatin:PanIslets_Crawford_protocol.pdf Duke/UNC/UTA/EBI_Open_Chromatin(Lieb):PanIslets_Lieb_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
 
Library strategy Bisulfite-Seq
Library source genomic
Library selection Reduced Representation
Instrument model Illumina Genome Analyzer IIx
 
Description Reduced Representation
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs
 
Submission date Mar 01, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE27584 DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
Relations
SRA SRX066290
BioSample SAMN00621771

Supplementary file Size Download File type/resource
GSM683790_hg19_wgEncodeHaibMethylRrbsPanisletsSitesRep3.bedRrbs.gz 13.7 Mb (ftp)(http) BEDRRBS
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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