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Sample GSM68909 Query DataSets for GSM68909
Status Public on Aug 18, 2005
Title Ames 22 month Dwarf Liver JDF213
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Prop-1 mutant (Ames) resulting in long lived dwarf pheontype
Extracted molecule total RNA
Extraction protocol Approximately 10 mg of snap frozen liver was used to extract >25 ug of total RNA was extracted using Ambion's RNAqueous-4PCR.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type third instar larvae imaginal wing discs
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Aug 09, 2005
Last update date Aug 17, 2005
Contact name James H DeFord
E-mail(s) jhdeford@utmb.edu
Phone 409-747-6817
Fax 409-772-9216
Organization name University of Texas at Galveston
Department Human Biological Chemistry and Genetics
Lab Dr. Papaconstantinou
Street address 301 University Blvd.
City Galveston
State/province TX
ZIP/Postal code 77555-0643
Country USA
 
Platform ID GPL1261
Series (1)
GSE3150 Aging Liver Profiles of the Long Lived Prop-1 Mutant Mouse (Ames) and Wild Type Controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1415670_at 1234.1 P 0.000244
1415671_at 3405.9 P 0.000244
1415672_at 4645.1 P 0.000732
1415673_at 421.8 P 0.010742
1415674_a_at 1140.1 P 0.000732
1415675_at 940.2 P 0.001953
1415676_a_at 6601.8 P 0.000244
1415677_at 2559 P 0.000244
1415678_at 3464.7 P 0.000244
1415679_at 4694.1 P 0.000244
1415680_at 986.9 P 0.001953
1415681_at 1964.1 P 0.000244
1415682_at 659.6 P 0.000732
1415683_at 2815 P 0.000732
1415684_at 1564.7 P 0.000244
1415685_at 2482.3 P 0.000244
1415686_at 2522.1 P 0.001953
1415687_a_at 7760.5 P 0.000244
1415688_at 2818.4 P 0.000244
1415689_s_at 658.4 P 0.010742

Total number of rows: 45037

Table truncated, full table size 1220 Kbytes.




Supplementary data files not provided

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