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Sample GSM68937 Query DataSets for GSM68937
Status Public on Aug 18, 2005
Title Ames 4 month Wild Type Liver JP183
Sample type RNA
Source name liver
Organism Mus musculus
Characteristics Wild type control for the Prop-1 mutant (Ames) resulting in long lived dwarf pheontype
Extracted molecule total RNA
Extraction protocol Approximately 10 mg of snap frozen liver was used to extract >25 ug of total RNA using Ambion's RNAqueous-4PCR RNA extraction kit.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type third instar larvae imaginal wing discs
Data processing Affymetrix Microarray Suite version 5.0
Submission date Aug 09, 2005
Last update date Aug 17, 2005
Contact name James H DeFord
Phone 409-747-6817
Fax 409-772-9216
Organization name University of Texas at Galveston
Department Human Biological Chemistry and Genetics
Lab Dr. Papaconstantinou
Street address 301 University Blvd.
City Galveston
State/province TX
ZIP/Postal code 77555-0643
Country USA
Platform ID GPL1261
Series (1)
GSE3150 Aging Liver Profiles of the Long Lived Prop-1 Mutant Mouse (Ames) and Wild Type Controls

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
1415670_at 2009.3 P 0.000732
1415671_at 3051.2 P 0.000244
1415672_at 3376.9 P 0.000732
1415673_at 306.1 P 0.008057
1415674_a_at 1053.8 P 0.000244
1415675_at 934.6 P 0.008057
1415676_a_at 5303.3 P 0.000244
1415677_at 2628.1 P 0.000244
1415678_at 2549.9 P 0.000244
1415679_at 5005.1 P 0.000244
1415680_at 901 P 0.008057
1415681_at 1554.7 P 0.000244
1415682_at 956.5 P 0.000244
1415683_at 2249.2 P 0.000244
1415684_at 1565.1 P 0.000244
1415685_at 2419.1 P 0.000244
1415686_at 1769.9 P 0.010742
1415687_a_at 8449.6 P 0.000244
1415688_at 3249.5 P 0.000244
1415689_s_at 694.2 P 0.010742

Total number of rows: 45037

Table truncated, full table size 1220 Kbytes.

Supplementary data files not provided

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