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Sample GSM692440 Query DataSets for GSM692440
Status Public on Dec 30, 2011
Title WT Dox- rep1
Sample type RNA
Source name WT Dox- rep1
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: wild type
treatment: untreated
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description WT MEF cells before doxorubicin treament
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 7.645348359
ILMN_1212612 9.661107181
ILMN_1212619 8.164146025
ILMN_1212628 7.424196874
ILMN_1212632 7.866587937
ILMN_1212636 12.58422163
ILMN_1212637 10.56682791
ILMN_1212645 6.958306001
ILMN_1212648 9.532162688
ILMN_1212653 8.678512971
ILMN_1212672 8.531149325
ILMN_1212682 7.377830166
ILMN_1212683 7.321606198
ILMN_1212685 7.479605911
ILMN_1212692 9.185312595
ILMN_1212693 8.954218216
ILMN_1212695 7.694179343
ILMN_1212698 7.286751221
ILMN_1212702 7.406463391
ILMN_1212703 7.871531152

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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