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Sample GSM692442 Query DataSets for GSM692442
Status Public on Dec 30, 2011
Title WT Dox+ rep1
Sample type RNA
 
Source name WT Dox+ rep1
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: wild type
treatment: doxorubicin
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description WT MEF cells after doxorubicin treament for 12 hours
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
 
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
E-mail(s) bynjh007@postech.ac.kr
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1212607 7.421450476
ILMN_1212612 8.396255914
ILMN_1212619 9.914945395
ILMN_1212628 7.480206265
ILMN_1212632 7.806603093
ILMN_1212636 12.72401595
ILMN_1212637 10.48536991
ILMN_1212645 8.005461986
ILMN_1212648 9.680345305
ILMN_1212653 8.049749325
ILMN_1212672 8.185468787
ILMN_1212682 7.648166204
ILMN_1212683 7.555508795
ILMN_1212685 7.393250354
ILMN_1212692 9.828376174
ILMN_1212693 9.309573189
ILMN_1212695 7.204042482
ILMN_1212698 7.361621013
ILMN_1212702 8.682307308
ILMN_1212703 7.883030602

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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