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Sample GSM692443 Query DataSets for GSM692443
Status Public on Dec 30, 2011
Title WT Dox+ rep2
Sample type RNA
 
Source name WT Dox+ rep2
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: wild type
treatment: doxorubicin
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description WT MEF cells after doxorubicin treament for 12 hours
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
 
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
E-mail(s) bynjh007@postech.ac.kr
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1212607 7.458449812
ILMN_1212612 8.272754387
ILMN_1212619 9.867235568
ILMN_1212628 7.484677924
ILMN_1212632 7.628889321
ILMN_1212636 12.73638665
ILMN_1212637 10.37923813
ILMN_1212645 8.040221823
ILMN_1212648 9.710184393
ILMN_1212653 8.139586455
ILMN_1212672 8.167464377
ILMN_1212682 7.427136951
ILMN_1212683 7.310783305
ILMN_1212685 7.375308571
ILMN_1212692 9.886875127
ILMN_1212693 9.012940905
ILMN_1212695 7.518001053
ILMN_1212698 7.272406538
ILMN_1212702 8.636537548
ILMN_1212703 7.864245948

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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