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Sample GSM692444 Query DataSets for GSM692444
Status Public on Dec 30, 2011
Title Sg Dox- rep1
Sample type RNA
Source name Sg Dox- rep1
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: staggerer
treatment: untreated
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description Staggerer MEF cells before doxorubicin treament
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 7.651882303
ILMN_1212612 11.22509776
ILMN_1212619 8.696938585
ILMN_1212628 7.587128381
ILMN_1212632 7.620678574
ILMN_1212636 12.57189817
ILMN_1212637 10.21652051
ILMN_1212645 7.146102907
ILMN_1212648 9.581452946
ILMN_1212653 8.679325385
ILMN_1212672 8.572252816
ILMN_1212682 7.511886241
ILMN_1212683 7.255765563
ILMN_1212685 7.375434721
ILMN_1212692 10.14665653
ILMN_1212693 9.660702449
ILMN_1212695 7.62733367
ILMN_1212698 7.39063241
ILMN_1212702 7.436026119
ILMN_1212703 7.955380422

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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