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Sample GSM692445 Query DataSets for GSM692445
Status Public on Dec 30, 2011
Title Sg Dox- rep2
Sample type RNA
 
Source name Sg Dox- rep2
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: staggerer
treatment: untreated
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description Staggerer MEF cells before doxorubicin treament
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
 
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
E-mail(s) bynjh007@postech.ac.kr
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
 
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1212607 7.472315273
ILMN_1212612 11.06364394
ILMN_1212619 8.550836444
ILMN_1212628 7.498042294
ILMN_1212632 7.670555186
ILMN_1212636 12.40100404
ILMN_1212637 10.29188308
ILMN_1212645 6.98397911
ILMN_1212648 9.504234866
ILMN_1212653 8.746880255
ILMN_1212672 8.557294307
ILMN_1212682 7.4504983
ILMN_1212683 7.33340416
ILMN_1212685 7.627491729
ILMN_1212692 10.33944446
ILMN_1212693 9.572556626
ILMN_1212695 7.484434904
ILMN_1212698 7.280552177
ILMN_1212702 7.461321097
ILMN_1212703 8.010413489

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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