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Sample GSM692446 Query DataSets for GSM692446
Status Public on Dec 30, 2011
Title Sg Dox+ rep1
Sample type RNA
Source name Sg Dox+ rep1
Organism Mus musculus
Characteristics genetic background: C57BL/6J
genotype: staggerer
treatment: doxorubicin
cell type: embryonic fibroblast
Treatment protocol Cells were treated doxorubicin for 12 hours.
Growth protocol Media: DMEM, 2mM L-Glutamine and 10% Fetal Bovine Serum
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Illumina BeadScan 500 System
Description Staggerer MEF cells after doxorubicin treament for 12 hours
Data processing The data were normalised using quantile normalization method with beadarray version 1.10 and lumi version 1.8.3 in R/Bioconductor package.
Submission date Mar 16, 2011
Last update date Dec 30, 2011
Contact name Bhin Jin-hyuk
Organization name POSTECH
Department Department of Chemical engineering
Lab Systems biology and Medicine
Street address Ji-gok research center, hyoja-dong, Nam-gu
City Pohang
ZIP/Postal code 790-784
Country South Korea
Platform ID GPL6885
Series (1)
GSE27983 Genome-wide analysis of gene expression perturbed by RORa in MEFs subjected to control and 12 hour DNA damaged condition.

Data table header descriptions
VALUE quantile normalized

Data table
ILMN_1212607 7.328615545
ILMN_1212612 11.10757911
ILMN_1212619 9.143071175
ILMN_1212628 7.597413748
ILMN_1212632 7.696992619
ILMN_1212636 12.91877969
ILMN_1212637 11.31740464
ILMN_1212645 7.042682523
ILMN_1212648 8.531929834
ILMN_1212653 8.771754655
ILMN_1212672 8.49645518
ILMN_1212682 7.347016999
ILMN_1212683 7.268203097
ILMN_1212685 7.284727761
ILMN_1212692 11.61804241
ILMN_1212693 7.840725353
ILMN_1212695 7.395744706
ILMN_1212698 7.30102281
ILMN_1212702 7.536425579
ILMN_1212703 8.849968528

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table
Processed data are available on Series record

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